Senior Bioinformatics Data Engineer

Job Summary

To enhance data engineering capabilities, the full-time Senior Bioinformatics Data Engineer will build and maintain ingestion pipelines, develop transformations, and implement clinical data ingestion paths, with opportunities for remote work.

Key Responsibilities

• Build and maintain Dagster-orchestrated ingestion pipelines for genomics vendors
• Develop and harden dbt Silver-to-Gold transformations, ensuring data integrity and performance
• Implement clinical data ingestion paths and reconciliation logic while collaborating on design decisions

Required Qualifications

• Bachelor's or master's degree in computer science, Data Engineering, Bioinformatics, or related field
• 5+ years of professional experience in data engineering with production pipelines on AWS
• Strong proficiency in Python and SQL, with advanced knowledge of dbt and a workflow orchestration tool
• Demonstrated experience building systems and workflows around AI coding agents
• Solid understanding of lakehouse architecture patterns and ETL processes